Rereading my last post, I realized that I may not have answered the original question properly.
There is nothing like an "apparent" pH value!
Let me restate first, what I said above: Unless there is a good reason to do otherwise, pH values should be measured in water. This is simple, and everybody understands this.
If for whatever reason you need to measure a pH value in the presence of an organic solvent, this can be done, provided you follow correct protocols. There is nothing "apparent" in such a pH value. If properly measured, with properly calibrated equipment, the pH values measured in the presence of an organic solvent are as real as the pH values measured in water.
What this value means with respect to the question if you have created a good buffer or not, this question can be answered only if you know the pKa of your buffer at this concentration of the organic modifier that you are using. If you know the pKa of your buffer at this organic composition, and you measure your pH with a properly calibrated pH meter within say about 1 pH unit away from this pKa, you have a good buffer.