both Agilent and Thermo have presentations / webinars available that show the issues associated with hydrogen as a carrier gas in GC/MS.
While H2 is great for the GC part it isn't so good for the MS part. Not only is the ionization energy for H2 lower but it is harder to pump out and more reactive. This means that the MS has to be inert, the flow rate has to be lower (even with a turbo pump) and still sensitivity will suffer.
It can be done but it isn't as easy as you would like. The next versions of EPA SW-846 Method 8260 and 8270 have hydrogen carrier gas listed with some conditions.
I was just reviewing 8260B and 8270D and noticed a caveat in each that is interesting and could possibly help with using H2 as carrier. 8260B section 7.3.1.2 and 8270D section 11.3.1.2 mention using either the criteria listed in Table 3 for tuning specs or specs that are published by the manufacturer. If the major instrument manufacturers could reach an agreement or at least individually come up with tuning criteria that accommodate the problems associated with using H2 carrier, would that become acceptable in the regulated setting? If m/z ratio for 96/95 in Volatiles BFB tuning was changed from 5-9% to something like 5-20% then passing for 8260B would be fairly easy, just as increasing m/z 68 and 70 vs 69 from 0-2% up to 0-10% would make 8270D work well too.
Seems like a simple change to us, but for a government agency this is equivalent to moving Mt Everest to South Africa using a spoon and teacup. The only aspect of the methods that would be effected at all would be Tentatively Identified Compounds when searching unknowns against NIST spectra, but I may do that for one sample per year, the rest are all identified versus the mass ratios generated by my calibration standards.