by
lmh » Fri Apr 11, 2014 1:11 pm
It'll be interesting to see what others do.
Since methanol, ACN and water are all completely miscible in all proportions, and assuming this is a modern C18 column (i.e. more-or-less indestructable) you can change it between any of these samples as quickly as you want with no risk, except as LiVD said, there will be a pressure rise on passing between methanol and water because of 50% mix being more viscous than either alone.
I leave my C18 columns in highish organic, either 70-80% MeOH or ACN. The only reason for not going 100% is a personal, and not very logical panic, about gradual precipitation of anything salty. Although column-abuse is not to be encouraged, modern simple reverse phase columns are incredibly robust.