by
lmh » Thu Mar 27, 2014 1:52 pm
In LCMSsolution all you have to do is look in the batch settings, "File Conversion" tab, and select the format you want, which includes LC output as AIA (netCDF), MS output as AIA, as well as MS as mzXML or mzData. You can do this before you run the batch, in which case it will be converted at the same time as running, and you'll get the data both in Shimadzu's format and preconverted, or you can do it as a post-run process.
You can also select a bunch of data files in Shimadzu's File Browser window in Postrun, right-click, and select "File Conversion".
I'm not sure if these options are also in LCsolution as well as LCMSsolution.
mzXML or netCDF are about as good as it's likely to get for easily-opened formats.