The following is only useful for temperature gradient runs, that has an inital oven temperature that cold traps the analyte of interest onto the front of the column (i.e. not isothermal runs)
What I did is to to create two methods, one called eg frontinject.m, and the other, rearinj.m
rearinj.m is your standard method that you run, with the temperature gradient, that is of course saving both signal data from the FIDs, with same pressure program.
Frontinj.m, is a low oven temperature isothermal method, that performs the same injection port function as your rearinj.m, eg pulsed split-less @ ? pressure. the isothermal oven program is set to run for .5 of a minute
you then create a sequence that starts and alternates between the Frontinj.m and the Rearinj.m, as what you will be doing is ignoring the data from the Frontinj.m and only processing the data from the rearinj.m
this works, because the sample that you injected using the Frontinj.m has not shifted since it was cold trapped onto the front of the column as the oven temperature has not risen.
this technique works, and I have used it for a while.
if you run a lot of samples, or there there a large number of users who put their sample onto the GC,it is best to write an excel macro that will create a sequence, that they can copy and paste into the sequence table, as a common problem I found, could be usually traced back to errors in entries in the sequence table, not with the technique.
hope this answers your question
Alex