The dwell volume (gradient delay volume) is chromatographically equivalent to an isocratic hold at the beginning of the gradient. So:
- if you have more than one peak on the chromatogram, are they all offset by the same time? (peaks near the beginning of the gradient can be ignored for this purpose!). If not, then the matter is not simply one of dwell volume differences, and you have a real problem on your hands!.
- if all the peaks are offset by the same amount, then this is good support for the dwell volume difference hypothesis. As suggested earlier, measure the dwell volume on the two systems and see if the difference in dwell times matches the observed time offset. If it does, that pretty much confirms the hypothesis. At this point, it's a question of what you have to do to placate the auditors/regulators. Your choices are:
1. Write up an SOP that justifies correcting retention times for dwell volume differences. This is dangerous because early peaks can be affected differently (i.e., it can only be applied to peaks that elute well into the gradient)P.
2. As suggested by Kimico, add an isocratic hold (or delay to injection) to the method on one of the systems to normalize the time delay between injection and arrival of the gradient at the column.