I would suggest using a suitable potentiometric pH meter system to confirm that the calculated spectrophotometric variation of pH is not correct.
I'd also be a little wary of choosing just 3 wavelengths when you have the capability of collecting the full spectrum with the HP 8453, as that should provide less noise.
My other concern would be if the instruments had two lamps ( D2 and Vis ) operating simultaneously, as any internal filters may be affecting the beam energy.
However, all of us here can speculate until the cows come home, and your best course of action is to contact researchers who specialise in measuing the pH of seawater.
A quick google search finds that the journal Marine Chemistry is littered with articles on seawater pH, and you should contact some of those authors, especially Byrne, as appears to be prolific on the subject.
I'm sure their email address will be on some publications.
Example,
Impurities in indicators used for spectrophotometric seawater pH measurements: Assessment and remedies
Wensheng Yao, Xuewu Liu and Robert H. Byrne, ,
Marine Chemistry
Volume 107, Issue 2, 30 October 2007, Pages 167-172
College of Marine Science, University of South Florida, 140 7th Avenue South, St. Petersburg, FL 33701, USA
Abstract
Spectrophotometric pH measurements have been widely used in oceanic CO2−system research. However, impurities in indicator dyes from different manufacturers may cause uncertainty in measured pH values. In this work we report initial findings surrounding the potential significance of indicator sources (manufacturers) on pH measurements obtained with the sulfonephthalein indicator m-cresol purple. HPLC analyses were used for comparative assessments of impurities in m-cresol purple obtained from a range of manufacturers. Results indicate that m-cresol purple from different manufacturers, and perhaps from different batches of the same manufacturer, have different types and quantities of light-absorbing impurities. Impurities can contribute to pH offsets as large as 0.01 pH units. The pH offset caused by impurities decreases with decreasing sample pH. Indicators can be purified using preparative HPLC. Until purified indicators and refined indicator calibrations become available, we suggest that investigators should reserve some portion of each indicator batch for comparison with the properties of purified indicators.
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Spectrophotometric determination of pH in seawater off Taiaroa Head, Otago, New Zealand: Full-spectrum modelling and prediction of pCO2 levels
Shane M. Ohline, Malcolm R. Reid, Shamus L.G. Husheer, 1, Kim I. Currie(b) and Keith A. Hunter(a)
a = Department of Chemistry, University of Otago, Dunedin, New Zealand
b = National Institute of Water and Atmospheric Research (NIWA), Dunedin, New Zealand
Marine Chemistry
Volume 107, Issue 2, 30 October 2007, Pages 143-155
Accurate measurement of seawater pH has long been sought by marine chemists (for example: [Dickson, A.G. 1993a. The measurement of sea water pH. Marine Chemistry, 44, 131–142, Dickson, A.G. 1993b. pH buffers for sea water media based on the total hydrogen ion concentration scale. Deep-Sea Research, 40, 107–118; Zhang, 1996; Tapp, M., Hunter, K.A., Currie, K. and Macaskill, B. 2000. Apparatus of continuous-flow underway spectrophotometric measurement of surface water pH. Marine Chemistry 72(2–4), 193–202; Friis, K., Koetzinger, A., Wallace, D.W.R. 2004. Spectrophotometric pH measurement in the ocean: Requirements, design and testing of an autonomous charge-coupled device detector system. Limnology and Oceanography: Methods 2, 126–136]. Recently, such attempts have taken on greater significance as anthropogenic carbon dioxide emissions may create rapidly changing oceanic pH. Spectrophotometric techniques have been accepted generally as the best for determination of seawater pH. Here we report a new technique using thymol blue as the indicator dye and fitting the entire spectrum from 400 to 900 nm rather than measuring the absorbance values at only two or three points in the spectrum. This full-spectrum modelling enables a reduction in signal to noise over other techniques. In the laboratory, we find with seawater samples a pH precision increase of five-fold “withinâ€