any one else have same experience
Everyone has had that experience.
The selectivity of a reversed-phase column is affected by (among other things):
- the purity of the underlying silica
- the "ligand" (e.g., C18, C8, cyano, etc.)
- the pore size of the packing (e.g., 300 Ã…)
- the pore size distribution
- the specific surface (m²/g) (this is a related to the pore size and pore size distribution)
- the surface coverage by the bonded phase (μmoles/m²)
- whether the reactive silane used for bonding was mono-, di-, or tri-functional
- what was the leaving group on the silane (e.g., Cl-, MeO, EtO, etc.)
- whether the bonded phase is a monomeric layer or polymeric (this is related to the type of silane used)
- the side groups on the silane (for mono- or difunctional silanes).
You have the "same specification" on two of those parameters.
I looked at the PQRI database of column selectivity similarities and differences on the USP web site:
http://www.usp.org/USPNF/columnsDB.html
The Ace 5 C18 300 does not show up in the 10 closest matches to any of the Vydac columns (by the way, you did not say which Vydac column you are using; I'll assume 201TP). I was involved in the original study and still have a copy of the actual database, so I went in and looked a bit deeper. The Ace 5 C18-500 ranks number 205 in similarity to the Vydac 201TP (out of 360 columns in the database).
Is the difference due to the purity of the silica? That is almost certainly a contributor; the Vydac 201TP has been around for decades while the Ace is based on much newer technology, so you would expect it to be a better column in general. That is probably not the only difference, however. Note that "better" is not always a good thing. There are many methods that only work correctly because of impurities in some of the older-technology (so-called "Type A") columns.
The lesson to be learned from all of this is that you
cannot realistically expect to substitute one C18 column for another without seeing changes in the method. If you must do it, the similarity databases on the USP website can provide a more accurate choice of a "similar" column. Those databases use standard text mixes to actually measure the selectivity of the columns, rather than relying on trying to sort out interactions among the dozen or so parameters that control it.