Pipettemonkey,
In the first place, the simple way to differentiate between the two is to dip a pH test strip into each vial and find which one is most alkaline.
But, the retention time of the salt and the freebase will be the same in a reversed phase system so you can't separate them based on reversed phase chromatography,
That is pretty much what I thought. To differentiate a base from its salt, Melting points, pH of solutions, solubility, etc, are methods that I put before HPLC.. Unfortunetly, the handle I use is quite representative of my level of clout.
If the salt would travel as an ion pair, then, perhaps, its rt would differ from the base (?) From this, I conjured up an aprotic solvent (THF, CH3CN, CCl4,) approach as a place to begin.
With this or any solvent system (unorthodox or otherwise), is such a task even theoretically possible?