nalandmark
OK, now that I see what you are doing I have additional remarks.
To summarize: You are analyzing essential oils, probably composed of alcohols, aldehydes, and hydrocarbons, both unsaturated and saturated.
You are injecting small amounts (0.2µL) and splitting the sample 100:1 or so.
#1 point: Your injection liner is not perfectly inert. You are open to all kinds of reactions catalyzed by the silanols and trace metals in the injection liner as well as possible deposits left from earlier injections. These reactions can vary from injection to injection, producing different amounts of reactants which often will co-elute with other peaks causing a variation in the measured area of these peaks.
#2 point: Carbowax is not a perfectly inert surface. Especially when hot it can also catalyze reactions, especially dehydrogenation of alcohols to alkenes with the same result as above, sometimes maddeningly variable.
#3 point: Your metal needle of your injection syringe can also cause reactions noted in points 1 + 2 above, ESPECIALLY IN NEAT INJECTIONS.
#4 point: Your analytes in your essential oil have different volatilities and can produce variable peaks 'natural' to any splitter injection system. No splitter design is perfect. There is always some discrimination of the sample. Fun Experiment: adjust the position of the column tip in the injector and see how your area percent values will change.
Add to these points that certain components can be reacting all along the column length and with metal components of the detector and suddeningly it becomes reasonable to expect some variation in results, even 1 or 2 % variation between different injections and GCs and detectors of the same design.
With capillary columns this variation is usually minimized, especially when compared to analyses performed on phase coated diatomaceous earth packed columns.
(age give-away) I can remember analyses with catalytic decomposition of cholesterol to dehydrocholesterol, and 1-decanol to 1-decene, usually because I was performing neat or too high concentration injections with too high an injection port temperature.
Chromatography is fun. I have been having fun in QA and research labs since the 1970s.
best wishes,
Rod