For decades, I've not worried about using IP reagents on reverse phase columns, I just assumed I was washing them off with my cleaning procedure, and used the same column for conventional RP and IP work.
When I started reading this forum I discovered that I shouldn't do that, but I still do, as my columns seem to last for years. However, I would strongly agree that if you can afford to dedicate columns to specific IP reagents, you should.
If, like me, you only need to run IP reagents once every few weeks or so, you should follow the manufacturer's recommendations for removing the ion-pair reagent, or develop your own...
My cleaning procedure is pretty simple, but does take time - seems to work for me, but certainly isn't optimal, as instrument availability was not critical for me. If your IP reagents are heavily laden with buffer, perhaps start the cleaning with a higher water content solvent, but 1:1 works for most compendial methods I've used.
The degasser rinse is only relevant if you have polymeric membrane degasser, as many modern instruments do. I've found that several IP reagents tend to form an equilibrium with the membrane that needs a reasonable solvent volume to remove. I work mainly with 250 x 4.6 mm columns at 1-2 ml/min, and the procedure is based on those columns.
Replace the ion-pair mobile phase bottle with 1:1 water / solvent ( CH3CN or MeOH ), rinse solvent lines and degasser membrane for at least 15 mins at 5 ml/min, then switch to column and flush for ~30 mins at the normal flow rate. Remember to flush/actuate the injector as well.
Replace first mobile phase with 95:5 water / solvent and rinse degasser for 10-15 minutes at 5 ml/min, then rinse column for 30-60 mins at normal flow rate.
Revert back to 1:1 water / solvent and flush for a further 30-60 mins at normal flows. Testing should show peaks should then have returned to conventional retention times, if not try more 95:5, or even 100:0 ...
Good luck, and please keep having fun,
Bruce Hamilton