Your seller gave you very bad advice.
CO2 is absorbed on a MS 5A column. It is not recommended.
If you wish to use capillary then you need a porous polymer column like Supel Q made by my company Supelco.
There are other manufacturers of similar columns.
But if you want to measure low levels accurately then you should not use a capillary column but a micropacked column or at least a packed column as they will allow a much larger sample capacity than you achieve with a capillary column and will allow you lower levels of measurement with better accuracy. (It is also a lot cheaper than a capillary but money is no object, right?

)
Supelco makes the best micropacked columns. I would suggest a 'R' or 'N' polymer for the best separation of CO2 from air and methane-ethane with a 80/100 or 100/120 mesh. 1-800-359-3041 for technical advice, or 1-800-247-6628 to place an order.
A 2 or 3 meter 1/16" OD 1mm ID column should be adequate for your analysis with a flow of 5 to 20 mL/min.
A sample of 100-500µL is suggested for use with a TCD or a helium ionization detector. With a methanizer and a FID you will be able to measure extremely low levels, far below your probable needs, but this requires hydrogen carrier. Helium carrier is suggested with a TCD.
best wishes,
Rodney George
Senior Research and Development Scientist
Gas Separations Research
Supelco
595 North Harrison Road
Bellefonte, PA 16823
814-359-5737 voice
814-359-5459 fax
rodney.george@sial.com