It would appear that you are getting normal performance from a sampling valve system from a laboratory GC.
2 out of 1000 repeatability is not bad.
I don't think there is any way of improving that unless you go with a very highly designed system, a special process analyzer.
Measuring a balance peak directly is not the way to get good repeatability on that peak.
You must measure by difference between 100 % and the sum of the impurities.
I repeat again:
You must measure nitrogen by difference between 100 % and the sum of its impurities.
If I have not made myself clear to you please give me a call or write me privately and I will attempt to clarify my answer.
best wishes,
Rodney George
Senior Research and Development Scientist
Gas Separations Research
Supelco
595 North Harrison Road
Bellefonte, PA 16823
814-359-5737 voice
814-359-5459 fax
rodney.george@sial.com