I'm assuming that the retention time didn't change, you're using a UV detector, the method used to work OK, and that you used the same mobile phase solutions for all three days, and that samples/standards are stored appropriately - so evaportion or precipitation aren't issues.
If not, that would be the first action. ensure that the sufficient mobile phase is made for multiple days, and ensure that the sytem is fully flushed after the samples and before close down. Day to day variations in mobile phase absorption could change peak areas.
The most obvious cause is the detector, possibly the lamp energy. Ensure that the lamp is OK, and that if you are using a reference wavelength that also has plenty of energy available. You could run a sequence, leave all the other modules on, turn the lamp off for a couple
of hours, restart the lamp, give it an 30 mins to stabilise, and repeat the sequence. If there are variations, then your lamp or detector is the problem.
Ensure that the day to day variation of the injection module is OK, and that the reinitialisation each morning isn't affected by a defective valve or actuator. You can check this by leaving the other modukles on, and turning on the injector and performing multiple injections. Flush, turn off injector for an hour, restart, and repeat the sequence of injections.
It's all down to systematically looking at what can change at each start, and systematically working through the modules.
Please keep having fun,
Bruce Hamilton