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Database for LC-MS/MS digested proteins in seed plants

http://www.chromforum.org/viewtopic.php?t=5315

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Database for LC-MS/MS digested proteins in seed plants

Posted: Wed Jan 24, 2007 5:08 pm
by sabikh
Hello:

I am trying to identify and characterizedigested proteins in divers seed plants (chickpea, soy, hemp...) by LC/MS/MS. I would like to know which database and engine search are more suitables for these proteins.
Any help will be very appreciated
Thanks
Sabik

Posted: Fri Mar 02, 2007 4:24 am
by Kostas Petritis
If these seed plants have been sequenced then there shoud be available fasta files in the net. About the search engines, if you have none, and you do not want to pay > $10,000, I would recommend XTandem that it is free...
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