Though not having worked for some years with lipids there is still the curiosity:
Bruce, is it known why/how polyunsaturated TG degrade? Are temps too high here? In work of the early 1980´s I didn´t see any thermal degradation of FA at up to ~280°.
It's about a decade since I worked with lipids, mostly on an HP5792a with split and SGE on-column injectors and FID.
The degradation of my samples appeared to be a mixture of thermal cracking and polymerisation. Any trace of oxygen or inlet activity will greatly accelerate decomposition, and quickly kill partially polar columns. An inert system would separate lipids well for weeks.
There usually is an increase in baseline signal at final temperatures when PUFA TAGs degrade, indicating a gradual elution of decomposition products.
The elution of a full profile ( FFA, MAGs, DAGs, Sterols, TAGs ) usually takes about 20 mins, and the unsaturated TAGs react in the injector and column and don't elute, even the smaller TAGs ( C46 - C54 ). The injector temparature was around 300C and the column went from 200 to 340C. Marine PUFA lipids ( C20:5, C22:6 ) tend to degrade in the injector.
Saturated TAGs are thermally stable and were used for frying food, however similar-sized polyunsaturated TAGs produce peaks that are much smaller, even in the absence of Oxygen.
Bruce Hamilton