Dear pathumweerawarna.
So, I think It is a plug of water getting into the ion source, I think this because:
-It only happens in "wet" techniques: Purge and trap, Thermal desorption ( atmospheric sampled tubes, not for standards).
-It only happens at a higher flow rates in a wide bore column.
-It only happens at the beggining of the chromatographic run.
-An aged filament is probably inplicated in the problem.
-It only happens when the filament is turned on.
Based on these I had tried with some success:
-Observe the Vacuum level indicator ( U. vac.) at the begining of oven program and keep the solvent cut time as long as posible ( maybe a new column? ).
-Change old filaments or interchange filament positions.
-Perform a new AutoTuning and Increase, just a little, the emission current.
-Improve the dry estage for P&T and thermal desorption.
good luck.