If you want to know if you elute the lipids from the column and separate them from the drugs of interest, try my method at
http://users.chartertn.net/slittle/ under the matrix effects section.
easy to do and you will know for sure where they elute.
Acetonitrile by itself does not elute the phospholipids very well at all (very hihly retained in this solvent, and broadly eluted).
Either pure methanol or up to 75% acetonitrile in methanol works well. I normally use 50/50 for most things, but other compositions offer some advantages depending on the analyte.
I found the Monochrom C18 (details of some separations on my website, above) column very highly recommended in the literature by someone who did a comparison of a variety of columns and have used it for all my drugs in plasma work.
Should definitely use a gradient. Again, one example on my website.
Never tried heparin as anticoagulant, but heard since it is polymeric in nature, can elute in many places in the chromatogram and cause problems. I have used EDTA (Na or K).
I have a paper in press on more aspects of this work. I found if you don't elute the phospholipids they begin to breakthrough. When they breakthrough, if your one of your analytes elutes at that point, its response in positive ion will change. After 5-6 analyses yield a steady-state response and the analyte response is again constant.
However, works best with unlabeled materials when use gradient. Isocratic not so good.
The lipids will probably be in your sample in differing amounts depending on the solid phase extraction or liquid/liquid extraction method used. I usually just precipitate the plasma with acetonitrile using a method I found in the literature. I think the reference is also on my website.
Good luck. Aggravating work..