Hello:
Besides being an environmental chemist, I dabble in the used lab equipment business on the side. It is possible, with a little luck to find a decent working no-frills instrument for your project in the price range you indicate. I bought my employer a HP 5890 with FID for $700 not too long ago. Great deal! If you are initially starting with a FID G.C., (which you surely are, with FAMEs) these detectors have not improved substantially in 20-30 years. An old Varian 3700, 3400, HP5880, 5730, 5710, Tracor 560, 540 will get you about the same sensitivity on FID as a 5890 will. G.C. columns on the other hand, have improved greatly in the same time frame. In my opinion, the Tracor 540 is the best bargain in used G.C.s today. Shunned by so many Agilent/HP only labs, this is a good instrument. If one has reasonable repair skills, you can keep an old G.C. working practically forever. I use a Varian 3700 every day for diesel analysis. Data crunching wise, you'll be running an integrator instead of ChemStation or whatever, but an integrator will do a fine job for your needs. The company I work for started about 10 years ago with one chemist and used equipment. While not huge today, we are a major player in town, and are debt-free! The American dream can still work, even in science. I really like LabX over Ebay. Good luck to you.
Glenn