Hi tangaloomaflyer,
The only thing I can think of besides changing the septa and liner, and making sure the column is not old, is to change some of the settings in the run method, focusing on the ramp settings. We run method 525 in our lab, which is similar, but we use dual columns; 30m length, 0.25 mm I.D., 0.25 µm film, like the Restek Rxi®-5MS. For something to start with, the ramps set up for our runs are: 1: 20 rate, 205 final temp. 2: 2 rate, 230 final temp. 3: 25 rate 320 final temp, 1 final time. 4: 0 off. When I was running volatiles (524) I had some of the same problems. I changed the ramp settings, so there was more of a ramp, (5 rates instead of 2). I was using a 20m column, and switched to a 30m, and both of those changes helped a lot. If you have a used 30m column available, it might be worth switching out the column to see if that makes a difference. Your method should allow for the column and ramp changes, but it would be a good idea to double check just in case. I hope those suggestions help because that's all I can come up with since I don't have that much experience with the semi-volatile methods.  Also if you go to Restek's website (
www.restek.com: go to the Chromatograms tab, then GC Chromatograms), you can filter through chromatograms that pertain to your method.  They list the instrument parameters along with the chromatogram, and that was very helpful when I was editing the 524 parameters.