Thanks for all of the suggestions. I was able to rinse the sample loop and sparge tube with methanol and I also cleaned the sparge tube mount and needle with methanol. The inlet liner was replaced recently. The pressure on the P&T device is 1.0 at 40 mL/min, and I replaced the MoRT just the other day. The leak check passes on the the first attempt. After doing these things I am still having the 2-CEVE issue so I am going to look into how to disassemble the transfer line between the P&T device and the GC so I can clean it with methanol as well.
It is fairly easy to disassemble the transfer line. First shutdown the instrument and allow about 15 minutes for the valve oven to cool. Remove the covers and the valve oven cover is right there in the front top behind the traps. If you follow the transfer line back from the GC you will see it run up to the column oven and attaches to one of the rear facing ports on the 8-port valve. Just use a 1/4" wrench to remove the connector.
From there you just need to fabricate something to connect a syringe to the line. The best I have found is a simple PEEK Luer to tubing adaptor(Upchurch has them) like what is used to prime LC pumps. Second best is some Silicone or Tygon tubing that will fit the Luer tip of a disposable syringe and is still small enough to seal if slipped over the ferrule on the end of the transfer line.
Sometimes you just have to end up replacing the silcosteel line inside the transfer line. It is 1/16" silcosteel tubing you can get from Restek, but I have also used some of their 0.53mm Mtx Hydrodeactivated transfer line or even 0.53mm Hydrodeactivated fused silica transfer line. They will give a little more restriction to the flow but can still handle normal desorb flows. For these you need to use the 0.8mm graphite/vespel ferrules to seal them in the port. The fused silica line is the most inert you can use, but also the most prone to breaking, but I have used them in emergencies before.