jsupica wrote "If the lines are pressurized, wouldn't helium just get out instead of air getting in?"
This is a big misunderstanding and one of the reasons that GC suppliers do not recommend using plastic tubing for the gas lines. Besides what Peter mentioned, you have to take into account partial pressures of gases. If you have a line with ultra pure helium in it at high pressure, the partial pressure of nitrogen and oxygen is virtually zero. Outside of the the tubing you will have nitrogen at a partial pressure of approx 600 mm of Hg and oxygen at 150 mm Hg. The plastic tubing acts as a membrane, and with a pressure difference for the nitrogen and oxygen, they will diffuse INTO the helium line. The same can happen if a flexible 'O' ring is used anywhere in the gas system for sealing purposes.
Gasman
For a spectacular demonstration of how gasses diffuse through plastics, spray some soapy water onto the plastic-lined braided metal lines that some cylinder manifold gas systems have between cylinder and regulator - there is enough gas leaking through to generate a thick foam. Works best with helium of course.
Peter