Clogging of the inlet frit usually leads to "shouldering" peaks, only in extreme cases you will see split peaks. But as Tom already pointed out, this will be the case for ALL peaks. Since only one of your peaks shows splittting and the other one is fine, this points to a "chemical" problem, not a "physical" one.
Splitting of early eluting peaks usually is caused by a solvent/mobile phase mismatch. In you're case, as you're seeing this phenomenon not from the beginning but only after ~200 injections, this explanation unfortunately is not really straightforward

. It seems some sort of column changing over the course of your analyses is also involved...
As a quick experiment, I'd try to inject smaller amounts of your sample on a "bad" column and/or, if there is significant difference between sample solvent and mobile phase, prepare a sample in the initial mobile phase and inject that one. With either approach, you should see some improvement concerning peak splitting if solvent/mobile phase mismatch is the root cause.