Depending on which peak is used for reference when calculate the RRT (I’ve seen some people use the dead time which isn’t correct) the dwell volume should not affect the RRT significantly. And not at all the selectivity.
A different column on the other hand – even if it’s the same brand and sometimes the same lot – could cause RTT change and even small selectivity differences.
Finally a brand new column could separate differently than a column that has been use for some time.
Best Regards
Depending on the shape of the gradient and, as you already wrote, the reference peak, the dwell time CAN have an influence on RRT. As an artificial example, imagine a gradient with an isocratic step at the beginning and later on a linear increase in %B. If the reference peak elutes during the isocratic step and the peak in question during the linear gradient (or vice versa), RRT will heavily depend upon the dwell volume. This is quite artificial, I admit. On the other hand, suppose a more complex gradient with multiple isocratic/linear segments - here the dwell volume will have an even higher influence. But, you're correct, for the general linear gradient used in probably >80% of gradient methods, dwell volume differences will have little to no influence on RRT.
Concerning the selectivity, my argumentation probably was a bit unclear. With "selectivity" in THIS case I refer to the peak spacing - which if RRTs differ a little will also differ slightly.
Generally, you're right. Stationary phase variability might be the underlying problem here. Could be interesting to see the validation data of this procedure. Hopefully, they've done robustness studies...