First off, read the thread suggested in DR's link above.
Next, run a "dummy" gradient (no injection) and see if the ghost peaks still appear. If they do *not* appear, then your peaks are coming from contamination in your sampler (vials, transfer lines, needle rinse, etc.). If they *do* appear, then your peaks are coming from contamination in your solvents or system.
Now, run a series of three dummy gradients:
- first gradient to clean garbage peaks off the column. Then equilibrate for 10 minutes
- second gradient, then equilibrate for 30 minutes
- third gradient.
Compare the size of the peaks in the second and third gradients. If they are bigger in the third gradient, then you have confirmed that the source is your "A" mobile phase.
At that point, it's up to you to figure out where the garbage is coming from. It may be as simple as dust from the environment.