" we have run an assay for a detergent on our hplc system (rp-hplc) and now all other methods are screwed up, it seems that it binds so strongly that we washed the system for days with pure acn, meoh, ipa, organic aqueous mixtures with salts but it still causes us problems. it seems that its not just in the column but also in the injector, lines etc.."
Hi,
If ur using mobile phase as a detergent (ion-pairing reagent) then accumulation of ion-pair will happen on the column bed.

So, If you make a column dedicated to a specific sample or a product will make your analysis simple and effective. Second and the formost thing is Column Washing. When your are working on some Dirty sample or Ion-pair chromatography, column washing should be proper in order to get reprodusability. Its better to wash Column primarily with water (100%) for longer time. Then go for Water:MeCN or MeoH (50:50) and the finally while closing up of method use higher organic. This will make washing up of detergent from the column bed.
Even after doing so, the problem persist, then Wash the column with 3% OPA overnight and then with column washing cycle. This will Definitely cure your column.
If the number of injections are high then try the column regeneration.