If you just added the water to the volumetric flask and did not mix it, then on standing the water and methanol begain to mix. If you take a 10 mL water and 90 mL methanol and mix them, you will not come up with 100 mL solution.
If you mixed the solution well before taking any out of the volumetric flask and if you make sure that the flask has been well stoppered since it was mixed, it should be consistant over a week.
The percentage of methanol in the solution would not have changed significantly. If you left the flask standing with water in the neck of the volumetric flask (not yet mixed), I doubt any significant quantity of water or methanol evaporated. But , as far as the solution being 90%, this is tricky because the quantity of water you added by topping up the flask will be more than 10 mL, because as the first bit of water into the flask reached the methanol it did mix and the volume decreased.
There are two ways people will prepare a 90% methanol/water solution - based on volume. One is to measure 90 mL methanol and 10 mL water and mix them. The other would be to add 90 ml methanol to the volumetric flask and then add water and mix, then add more water and mix until there is no significant change in the level of the solution in the flask. And these two ways of making solutions make two different solutions. The difference is not large, and in many applications is not sufficiently significant to matter. You can also make solutions based on weight pecent. (You can find discussions of percent solutions on this site.)
(And in most cases, volume measurements with graduated cylinders are adequate for making percent solutions.)