Well, it won't solve this current problem as you've resolved it as being due to data system issues. Nonetheless, here are some additional references folks may want to take a look at regarding the influence of pressure on retention and on selectivity.
Journal of Chromatography A
Volume 1209, Issues 1-2, 31 October 2008, Pages 195-205
Investigation of the effect of pressure on retention of small molecules using reversed-phase ultra-high-pressure liquid chromatography
Morgane M. Fallas, Uwe D. Neue, Mark R. Hadley and David V. McCalley
Abstract
The effect of inlet pressure on the retention of a series of low molecular weight acids, bases and neutrals, was investigated at constant temperature in reversed-phase liquid chromatography using a commercial ultra-high-pressure system (Waters UPLC instrument). For neutral compounds, relatively small increases in retention factor of up to 12% for a pressure increase of 500 bar were noted; the largest values were obtained for polar solutes, or solutes of higher molecular weight. Ionisable acids and bases gave much larger increases in retention with pressure, in some cases as high as 50% for a pressure increase of 500 bar. [/b]Thus, such compounds could show increases in retention factor approaching 100% over the pressure range available in the commercial UPLC instrument. Due to these differential increases, significant selectivity effects can be obtained for mixtures of different types of solute merely by changing the pressure.
Journal of Chromatography A, 1090 (2005) 16–38
Michel Martin, Georges Guiochon
Effects of high pressure in liquid chromatography
(Abstract too long to repeat here, but very good article)
Journal of Chromatography A, 1070 (2005) 13–22
Influence of pressure on the properties of chromatographic columns II. The column hold-up volume
Fabrice Gritti, Michel Martin, Georges Guiochon
Journal of Chromatography A Article in Press,
Practical Implications of the “Tanaka” Stationary Phase Characterization Methodology using Ultra High Performance
Liquid Chromatographic Conditions
Melvin R. Euerby, Matthew James, Patrik Petersson
Abstract
The practical implications of performing column characterization protocols (i.e. Tanaka) and their resultant chromatographic selectivity parameters using small dimension columns (i.e. 50 × 2.1 mm I.D.) at high pressures have been critically compared to those obtained using conventional LC methodology. Retention factors should be corrected for the system extra column volume even when determined on ultra high performance liquid chromatographic (UHPLC) systems with low system volumes.
An increase in pressure resulted in a general increase in the retention factor for most analytes, the degree being dependent on the physico/chemical properties of each analyte and the chromatographic conditions employed. However, analytes chromatographed at pH values close to their pKa values exhibited a substantial decrease in retention factor. Performing the Tanaka and extended column characterization procedures at pressures that would be encountered during the characterization of small particle sizes packed into 50 × 2.1 mm I.D. column formats at a constant linear velocity according to standard protocols, resulted in comparable chromatographic selectivity parameters to those determined using standard HPLC systems and column formats. However, due to the wide structural diversity of analytes employed in other popular column characterization protocols, it is imperative to demonstrate comparable results when small columns packed with small particle sizes are chromatographed at increased pressure and compared to standard column formats – otherwise erroneous comparisons and conclusions may be made.
LC-GC online, April 2011
Selectivity in Reversed-Phase LC Separations, Part IV: Pressure Selectivity
John W. Dolan
Journal of Chromatography A, 1136 (2006) 192–201
Experimental evidence of the influence of the surface chemistry of the packing material on the column pressure drop in reverse-phase liquid chromatography
Fabrice Gritti, Georges Guiochon
The effect is very pronounced for larger molecules like peptides, proteins etc.
Anal. Chem. 2005, 77, 3425-3430
Separation of Peptides from Myoglobin EnzymaticDigests by RPLC. Influence of the Mobile-Phase Composition and the Pressure on the Retention and Separation
Nicola Marchetti and Georges Guiochon
Cheers,
Tom Waeghe