Bill, I agree with you that there are a lot of phases out there which are as full of amino groups as an old bonded phase was full of silanols. But this is not the case for other phases, so we need to be careful not to generalize.
Many, if not most, of the embedded polar phases are amide phases that are created in a 2-step process. You bind an amine to the surface first, than you react it in a second step with an activated long-chain carboxylic acid, such as a C12-COCl. If you do that you have invariably some amine left on the surface that creates these effects that you have observed.
From my standpoint, this is the amateur's way of making such a phase. Companies with a real synthetic capability synthesize the desired ligand first, and then bond the complete ligand to the surface. In addition, in the case of the ...Shield RP phases by Waters, we use a carbamate linkage, with the oxygen of the carbamate oriented towards the silica. This ensures that even if there were a breakdown of the embedded polar group that you will not be left with a silly strongly interacting group on the surface. I have presented this case at more than one HPLC conference and in papers, and a few of my colleagues have improved their EPG product.
I have not tested the phases that Chris is talking about, but considering that they were introduced late in the game and have a complex design, I do not think that they made the mistake of the left-over amines that early phases and primitive copies of these early phases were suffering from.
As with standard bonded phases, there is high quality and low quality, and a knowledgeable user will find out quickly.