I've been working on this, a bit, for electronic CLP package generation. At the moment the system involves setting up the default printer on the chemstation computer to be a .pdf printer (one that works with chemstation, bioPDF does (with ours) but not all do) and set up the method to automatically print a detailed report after each run. bioPDF allows you to set the save name parameters and can be set up to just dump the file, so when the analyst runs all of the data gets a detailed .pdf created. Then after data review the analyst prints another detailed .pdf that reflects the changes. We've done this for a few CLP-like packages that they just wanted .pdfs of (no hard copy).
Eventually I want to pull the 'm' flag (denoting a manual integration) for each analyte when the data is parsed into our LIMS system and then used those m flags to sort, clip, and compile a .pdf for each data file that has the before/after along with the summary for the data (veryPDF Split-Merge should work via command line interface). But since we don't do very many CLP jobs that project is on the back burner.