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Isocratic method, 20% acetonitrile in 10 mM unbuffered ammonium acetate.
Flow: 0.5 ml/min
Temp: 70C
Inj vol: 10 µl
Column: Acquity BEH Shield RP18, 1.7 µm, 2.1 * 100mm
After about 20 injections the peptides with acidic functions start to loose retention, messing up the separation. Normally you would think that the pH of the mobile phase has changed, but the separation is not improved by preparing new mobile phase. Changing to a new column is the only way to get the separation back again (new column + old mobile phase = OK)
Are my conditions to harsh for this type of column, or do you have any other ideas?
