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Reproducibility stability issues Agilent GCMS (Extr. Source)

Posted: Wed Jan 15, 2025 1:07 pm
by environeer
Hello forum,

we run out of ideas.
We bought a new instrument and face extreme difficulties to achieve stable conditions.
To keep things simple, we use a n-alkane standard (containing nC10 – nC40 in n-hexane, 4ng/µl each).

The symptoms of the last run on this instrument:
• With n=8 consecutive injections it is hard to get near a RSD of 5%.
• Each run shows an increase in abundance. Increase in peak area goes up about 20%-50%(from first to last run) depending on the n-alkane.
• Before and after the sequence (2 blanks, the 8 standards mentioned above, 1 blank) the abundance of the PFTBA fragment 69mz increased from 290k to over 400k, EMV stays at the value derived from the tuning. Air/Water check always turns out okay.

Other varieties are decreasing area counts of the alkane standard and PFTBA fragments. It is very hard to narrow the cause down.
We even went from splitless to split (3:1 and 5:1) and tried different tunes even (e.g. a-Tune to use the extractor source as a SS-source to simplify this even more), but, stable conditions were never achieved.

As Agilent has a checkout method (single SIM for OFN and runtimes of 6 minutes) not adequate for observing these issue it seems, the instrument is OK in their opinion, no further action needed.

The Instruments:
Agilent GC8890 and MSD 5977B
Splitless injection of 1µL
Agilent DB5-30x0.25x0.25
42°C to 325°C with 5.52°C/min and final hold for 10 minutes, total of 61.8 minutes
Transfer line at 280°C
Xtr EI 350 Source

Has anyone experienced a similar unstable/erratic behaviour? What could cause these shifting intensities? We appreciate every hint.
Thank you!

Re: Reproducibility stability issues Agilent GCMS (Extr. Source)

Posted: Fri Jan 17, 2025 8:57 pm
by cjm
Questions: What is the solvent for your 1.0 uL splitless injection and what's the inlet temp? What is your carrier gas and column flow? Are you running constant flow?

If the injection solvent is methylene chloride or hexane you may be experiencing flashover which may lead to increasing areas with subsequent runs.

We have better consistency with splitless injections when we moved to pulsed splitless. Not only does it reduce inlet residence time, but may help minimize flashover which may reduce your RSDs from run to run.

Re: Reproducibility stability issues Agilent GCMS (Extr. Source)

Posted: Mon Jan 20, 2025 9:01 am
by environeer
Hello Christian,

Thanks for your reply, I indeed missed to mention that.

• The solvent is plain n-hexane
• Injection is done at 40°C and ramped at 12°C/sec to 350°C
• Carrier gas is He at 1.1 mL/min in constant flow mode

I understand this flashover as a carry over phenomenon, but inside the injector? Following blanks (pure n-hexan) are fine though. And, the increase in PFTBA fragment intensity after a sequence would not be related to that I assume (overlapping issues here are possible of course).

We use a CIS system from Gerstel, pulsed spitless is according to them of no use. We tried that out nevertheless, but, to no effect…