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Minimal HPLC from Used Components, Total Cost <$1K

Discussions about HPLC, CE, TLC, SFC, and other "liquid phase" separation techniques.

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I recently assembled a basic HPLC-UV system for hobby use (mostly agricultural, like capsaicin for superhot breeding), at surprisingly low cost--the first generation of practical instruments is now in the hands of general surplus equipment traders, one step from the junkyard. I wanted to share my experience here for the benefit of anyone attempting a similar goal. I'd also appreciate any advice, especially if anything I'm doing here looks totally wrong. I'm pretty obviously not a professional chromatographer (or chemist of any kind), but I'm comfortable enough with most of the engineering work.

I bought a Waters 510 pump, on eBay as is. It was missing most of the plumbing, which I replaced with 0.010" PEEK and the finger-tight ferrules. This was easy to work with. I didn't use any special tool to cut the tubing, just a new sharp razor. It also had no draw-off valve, just a hole for a 17 ga needle to prime the pump near the inlet. That hole needs to be covered in normal operation, and I'm not sure how that was supposed to work. For now I'm just leaving the needle permanently inserted, with a Luer stopcock to close it off when the priming syringe isn't attached. I was able to prime the pump with a standard 5 mL syringe and drugstore 91% IPA; I understand its relatively high viscosity should make that easier. Priming with methanol also seems to work, perhaps with a bit more effort. After priming, I found that while each pump head delivered the expected (half) flow rate alone, flow decreased and became inconsistent when the two pump heads were connected together through a tee. I traced this problem to the output check valves, which looked very worn--so the two heads were trading the same solvent back and worth. I was able to find a rebuild kit and rebuilt both valves, apparently solving the problem. The pump delivered ~2500 psi into the column (per below) around 1 mL/min of pure methanol, which seemed about right. The pressure fluctuated though, and the left head slowly leaked. I replaced its seal, and both problems resolved. The pressure sensor needed to be zeroed, using the trimpot on the adjacent printed circuit board. I paid $150 for the pump, plus $50 for the rebuild kit and $30 for the seal. I'd chosen the 510 partially for its abundance of spare parts, and that turned out to be important.

I bought a Waters U6K injector, again as is. It arrived with no sample loop, but I bought a new 20 uL loop and installed it. The back-pressure when injecting was very high, and the needle sealed poorly, with the result that most of the sample leaked out. I disassembled the injector completely (which requires snap ring pliers for the cam that actuates the microswitch that marks the injection time, but no other special tools) and tried cleaning all the ports with a thin wire. This may have helped, but I still got the high back-pressure. After some study, I slightly loosened the male-threaded round part that retains the valve on the vent port; the back-pressure problem was solved, and the valve still didn't leak under pressure. I tightened the nut around the injection port, and that solved the leak around the needle, I guess by forming the PTFE seal more tightly around it. I paid $60 for the injector, plus $20 for the loop. It's possible that I should have just bought a Rheodyne 7125 or similar; they're pretty cheap too, and seem more convenient.

I bought an HP 79853C, the variable wavelength detector from their Series 1050, advertised as working. Upon receipt, the optics package was bashing around inside, I believe because the screws that are supposed to retain it during shipment weren't installed. That hadn't visibly broken anything, though. The deuterium lamp was dead (possibly from the bashing?), but I bought a new one and it ignited. The detector then passed all self-tests and seems to give plausible output. I paid $160 for the detector, plus $150 for a new lamp.

I bought a 4.6x250mm C18 column for $80, and a guard column for $40. I hadn't realized how high the pressure would get with the long column; even 1 mL/min of 70/30 water/methanol is beyond my max working pressure, which seems to be limited practically by the PEEK tubing (which burst around 5000 psi, though maybe at a weak spot from a pre-existing kink). I'll probably get a shorter one, especially since I'm considering a switch to ethanol for safety reasons. In any case, that makes $740 total for the major components. I also bought various tubing and fittings, a vacuum filtration setup and some 0.45 um membranes, microliter syringes, my solvents and some Type I water, etc., for a total just under $1K.

Assembling everything, an injection of 2 uL of 100 ppm caffeine showed the expected peak, plotted on an oscilloscope connected to the detector's analog output. My oscilloscope has cursors and can integrate peaks, though it's obviously less convenient than a real chromatography data system. (Is there any cheap option for that? I see stuff like Clarity Lite, but that's >2x my total spend so far.) I haven't actually fit a calibration curve yet, but so far the system looks more than repeatable enough for my purposes. I'm not degassing beyond the vacuum filtration, and I've seen no trouble with bubbles. I connected a 40 cm 0.005" PEEK capillary to the detector output per HP's recommendation, but it doesn't seem to make a difference.

In any case, I've at least learned more here than I did from handing the TA an autosampler vial when we did our "HPLC lab". Any further advice appreciated, or perhaps this will help someone else enjoy these historically significant machines for another few years.
as for your data recording task, maybe have a look at this post in another thread:

https://www.chromforum.org/viewtopic.ph ... 54#p394654

be aware, when switching to ethanol, your pressure may be almost doubled.So if methanol/water is already too high, then ethanol will be even worse.
Maybe your high pressure also comes from your column which may be (partially) blocked
Get some secondary containment for that pump. If there's any oil left in it, it will eventually leak like the Exxon Valdez.
Thanks,
DR
Image
as for your data recording task, maybe have a look at this post in another thread:

https://www.chromforum.org/viewtopic.ph ... 54#p394654

be aware, when switching to ethanol, your pressure may be almost doubled.So if methanol/water is already too high, then ethanol will be even worse.
Maybe your high pressure also comes from your column which may be (partially) blocked
Agree on the column, I would believe a 4.6x250 would not have huge back pressure at 1ml/min unless it is a smaller than 5um packing.
The past is there to guide us into the future, not to dwell in.
It also had no draw-off valve, just a hole for a 17 ga needle to prime the pump near the inlet. That hole needs to be covered in normal operation, and I'm not sure how that was supposed to work. For now I'm just leaving the needle permanently inserted, with a Luer stopcock to close it off when the priming syringe isn't attached.
normaly there should be a piece of teflon tubing attached to that purge valve, where you then suck the solvent through the line. The valve is opened and closed by turning the knurrled, black nut. If you turn it out fully, there should be a teflon ball in the back (maybe even some washers), which does the sealing when closed. It may become damaged by overthightening or by sticking needles fully in and scratching it. (Normally only stick the needle in the teflon tubing attached.) Then turn it about half or full turn, draw the solvent until all air is out, the close it again, just until thight - not more.

So maybe you need to look for a replacement ball for that purge valve. mayb there are still some maintenance kits out there.
And thanks, in reply:
Get some secondary containment for that pump. If there's any oil left in it, it will eventually leak like the Exxon Valdez.
There's a transparent plastic enclosure at the back full of gears, with roughly an inch of oil in the bottom and a pump to recirculate it. The gears are noisy at first, but they quiet down once they're lubricated. That would suck if it leaked; I'll put it in a greenhouse tray or something. Is this just normal mineral oil, or something more toxic?
normaly there should be a piece of teflon tubing attached to that purge valve, where you then suck the solvent through the line. The valve is opened and closed by turning the knurrled, black nut. [...]
As far as I can tell, the purge valve is missing completely. I've got the cylindrical part with the main solvent inlet, and the two outlets to the two pump heads; but where the valve part would normally screw in, I've just got a piece of plastic with a hole that closely fits a 17 ga needle. The plastic piece doesn't seem to move at all. I'd thought initially that was a user customization; but then I saw that Waters sells 17 ga needles, so then I wasn't sure. The needle with a Luer stopcock seems to work pretty well for now, though it does leak a drop of solvent out every ten minutes or so (which I guess is better than sucking air in).
Maybe your high pressure also comes from your column which may be (partially) blocked
Agree on the column, I would believe a 4.6x250 would not have huge back pressure at 1ml/min unless it is a smaller than 5um packing.
It's 5 um. The seller thought (but wasn't sure) that it was unused new old stock. I don't think I could have clogged it already myself, especially since I'm using a guard column (which doesn't show high pressure alone). I've flushed with >10 column volumes of methanol with no change in backpressure; so I guess the next step would be to try flushing in reverse? Try flushing with more water, in case it's precipitated salts? I've also got a shorter column coming and will compare.
as for your data recording task, maybe have a look at this post in another thread: [..]
Studying from that thread and other references, I'm thinking maybe PeakSimple or OpenChrom would be my best options? I could save a CSV file from my oscilloscope, then convert to something like .xy format or OpenChrom's CSV format with a fake m/z as set out in

https://chemistry.stackexchange.com/que ... -openchrom

Then I'd have relatively complete analysis tools (integration and calibration), just offline.
ADC solution.
https://www.unichrom.com/simple/simplee.shtml

https://black.inpnet.net/support/simple ... 06:12.webm

Just make your Arduino or something else stream values in text format.

For such a heroic effort we can provide free UniChrom license. Please write.
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