by
lmh » Wed Aug 16, 2023 4:48 pm
I wouldn't do this, but the reason's not obvious.
Trapping is actually quite sensible if you want to inject large sample volumes. It happens automatically on a gradient method. If you injected 50uL of a sample dissolved in running-solvent on an isocratic method at 200uL/min flow, it'd be horrible, because your peak would be 15 seconds wide before it's even started to spread as it passes down the column. So if you start your gradient at a level where the analyte binds tightly, using a sample solvent that's weak, you can inject an enormous volume and the analyte will build up as a tight band at the start of the column, as if it had been injected in a tiny volume.
What's happened in the original poster's situation is an extreme of what gradient developers often do. Gradient people often start with a simple gradient from 5-95% and then realise that all their peaks are eluting between 40 and 50%. They then modify the gradient so it rises pretty fast from 5-40%, then much more slowly to 50%, then faster again to 95%. In the situation the original poster described, the method basically rises instantly from the equilibration percentage (which was a "trapping" percentage, very weak solvent) to something much higher (where maybe the analyte would be moving along the column).
The difficulty is working out when it happens relative to the injection! The previous method ended with the pump at X%, the new one starts at Y%, so at some point the pump must change. But does it change when the new method is loaded? Or when the autosampler declares "time zero"? I'm not 100% sure that every manufacturer will have made the same choice! If it happens when the new method is loaded, then the amount of solvent that's been pumped at Y% before the injection happens will depend on how fast the autosampler is, which is definitely different between manufacturers. If it happens when the autosampler declares "t=0" then whether or not the solvent has reached the sample or column depends on the various dead/delay volumes of the system, which again vary.
So you might end up with a method that works fine on your system, but doesn't work when someone moves it to a system from a different manufacturer, or when you upgrade your system and buy a better autosampler.
And for that reason, I wouldn't do it deliberately, though I'd be quite happy to believe it works!