Thank you, kind sages of the chromatography world.
Uwe - In line with your suggestions, I have been doing my own work at attempting to optimize his systems in my own time. In fact, I've been doing that since I posted this 'rant'. I really do hope I can constructively suggest some improvements to his systems, and from there perhaps convince him of other changes. However, I am limited in what I can demonstrate because of some spatial restrictions he has placed on his instrumentation (if I had a picture, I would post it, but I'll say this... I'm 6'4" tall, with a 6'8" wingspan, and I can barely vertically reach the sample tray on his Agilent 1100, and the MS/MS it is coupled to is sitting above my head. If I could explain why the instruments ended up in this arrangement, I would. All the people in my lab just scratch their heads and walk away.). This is the other part of the "the way he runs his instruments is insane" rant.
Bruce - "I've encountered situations where analytical changes have been catastrophic - including causing the demise of a 50-year-old company because new instrumentation couldn't cope with a variable, dirty process, and the experienced staff had been made redundant and moved on."
Bruce - thanks for scaring the hell out of me. However, if a company needed a small change to affect its demise, it was probably headed there anyway. In any case, he's not just a workmate, but the co-owner, and I really don't want to cause the demise of the company I work for... My wife might not be happy to hear we can't pay the mortgage anymore because I was picky about fundamentals.. I think, in this case, that yours and Uwe's advice is good - show him how change can be beneficial, and incrementally change his point of view.
I do understand the "If it ain't broke" code, but I have always advocated one caveat to that belief system - Sometimes you don't know it's broke until you're shown that it is, and until then you're an ostrich with its head buried in the sand. My motto - Always learn, always read, always question, always get better - "if you aren't growing, you're dying."
Incidentally, the motto for the few people in my section of the lab is "Cans of worms opened 24/7", in that we're seemingly the only people in the lab who look at regulations, requirements, and processes from a "worst-case" point of view, tear them apart, and then present those 'worst-case' points to the boss. So, we often discuss amongst ourselves the pros and cons of best practices versus "what works". It's a frustrating but constructive effort to become better at what we do.
I will take your collective advice on trying to constructively implement incremental changes. It's just very frustrating when you want to do it all at once, and instead you need to drag it out over a couple months or more like I probably have to do in order to effect the desired change...
Thanks for the suggestions and comments!