I'm doing low pressure LC with proteins, SEC with superdex, and affinity with sepharose. Our lab has always used Lab Alliance pumps (series 1 and series 3) because they seem to be rugged an reliable. For the most part we've used them for low pressure analytical SEC. Why we buy a pump capable of operating at 5000psi when we seldom exceed 100 is beyond me. If the flow rate was off by a bit we never noticed it because it was at least constant, therefore our retention times were constant as well. Recently, since we've started using them for affinity, flow rate accuracy has become more important. If we set the software controlling the pump to tell it to load a 500 ml sample and it tries to load 550 ml, that extra 50 ml of air causes a problem. We recently noticed that one of our pumps was doing just that. We tested it by telling it to pump 5 ml/min for 8 min (40 ml). When we measured (difference in volume of buffer at the inlet reservoir), it had pumped 42.5, around a 6% excess. We then tested our other pumps (same manufacturer, series 1 and series 3) and found the same problem, all had higher flow rates than they were set for.
My question is, does the pump, which is capable of handling 5000 psi of back pressure, require a minimum amount of back pressure to give an accurate flow rate? I noticed on the qa/qc form that came with the pump, that the flow rate test was conducted at 1000 psi (flow rate was 99.5% accurate). I currently have a 20 psi back pressure regulator on the system to reduce bubbles, but removing it doesn't seem to change the flow rate problems any. Does anyone with experience with these pumps know the minimum pressure I need to use, or can you think of another reason that a few of these pumps are delivering a higher flow rate than they should?