Hello Sam,
Similar to the web link I posted, I would probably use a higher flow rate and then split the flow, using a back pressure regulator on the waste line so that I could direct the flow to the capillary column.
Hello Uwe,
The main difficulty that I face is sensitivity. Since ESI is more sensitive at low flow rates, I was hoping to increase my sensitivity by running at lower flows. Although with today's heated ESI sources that can effectively desolvate at high flow rates, this may not be much of an issue. I don't know how much I'll gain, but I am willing to try.
I am aware of chromatographic dilution effects that will result in an increase in sensitivity, but I expect that any increase in sensitivity from this will be minimal, since I would have to scale all the other parameters like injection volume, etc. to avoid overloading the column and maintain good chromatography (Trace Quantitative Analysis by Mass Spectrometry, Boyd et al, 2008 p. 87).
Lastly, I am somewhat concerned about the packed bed being less dense with very narrow columns, from the wall disturbing the bed. I plan to use 3.5 or 5 micron particles. In your book (HPLC Columns: Theory and Practice, page 53) you mentioned this effect, but noted that this becomes important as the column diameter is less than ~30 particle diameters. Although I am well over this 30 fold limit, I am somewhat concerned about a bed not being as well packed, since I have an interference eluting close to my analyte that I need to separate. Resolution is good now, but I can't really afford to lose any.
Two things to note:
I am using MRM in ESI+ for detection. I wanted to try MS3 on an Qtrap (quadrupole/ion trap) to try to remove the interference, but my peaks are very narrow and I don't think I can get the proper number of points across the peak to quantitate.
I am extracting a compound from whole blood, the recovery is about 70% and the matrix effects are about 20% (matrix effects are enhancing signal). I am trying to improve recovery, but I can't gain too much from this.