Thanks for the response.
I'm concerned about losses in recovery in addition to loss in capacity.
In the past, we have had a system "eat" low abundant natural peptides purified to near homogeneity. Since then, I've passivated metal surfaces on the pump, loop, (everything upstream of the column) with 6 M HNO3 followed by water, ETDA, then water, 2-propanol
Since natural peptide isolation is very unforgiving, I want to make sure everything is as good and clean as it can be. Column capacity is important, but the amounts injected at that stage should be well under capacity. However, recovery is everything, so I'd like to give our 1 mm ID columns a treatment.
If I decide to clean 1 mm columns with some sequence of water, 1% TFA/IPOH, pure IOPH, DCM, IPOH, water, where would EDTA fit best in this sequence-- in the beginning or end, followed by another water wash?
If my blank runs are clean, baseline stable, and the peak shape from a few peptides I use as standards look good, am I worrying over nothing? (I should add that I have no way to judge recovery because I cannot integrate).