I've observed on just ONE of our 1100 systems that maybe 5% of the time the first injection of a Sequence just runs forever, so never advances to second injection. I've reported to Agilent, no one knows why, this has been going on for a bunch of years. Other 1100 with same Windows and same A.09 ChemStation don't do it. We just wait to make sure a second injection happens, before departing; it has only occurred with the very first injection.
On a different 1100 stack, we (very occasionally) get a 100% completely flast baseline, like it does a "no injection" run; no disruption due to bypass valve operation, then next injection from same vial is perfect. That's a bigger issue for us, re-booting didn't affect...