First of all, pH gradients, IMHO, are a nightmare to transfer from one instrument to another, because the column "titrates" the mobile phase. The result is that the shape of the gradient changes as it moves down the column.
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Simplest method development approach (since you used "pKa" rather than pI, I'm assuming you're dealing with "small" molecules rather than proteins):
1. start with an appropriate buffer for a pH 2 units or so on the ionized side of the pKa.
2. Run a linear gradient from 0 to 1N NaCl. If all your peaks are close enough together (say, less than 20% of the gradient time), then you can probably do the separation isocratically. If the peaks spread out over a wider range, then you'll have to stay with a gradient. You can estimate the appropriate ionic strength from where your peaks come out.
3. Assuming you haven't gotten a workable separation, move the pH closer to the pKa (0.5-unit intervals at first, then 0.2-unit intervals once you get closer to the pKa.
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Dwell volume is dwell volume. You can measure it with any detector (UV, conductivity, whatever):
1. Remove the column and run a connecting tube from injector to detector
2. In the A reservoir, put an appropriate solvent that gives a low response (e.g., water).
3. In the B reservoir, put the same solvent, but add something detectable (acetone for UV, nitric acid for conductivity, etc.) at a concentration that will give you a measurable response within the linear range of the detector.
4. Run a gradient and see how long it takes the change to get to the detector.
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If you simply ran a concentration gradient (as suggested above), then you use the same salt, but return to the original concentration. No equilibration time issues involved; you simply have to wash out the column. 10 column volumes is a good rule of thumb.
If you have run a pH gradient or otherwise changed the ionic form of the column, then you need to convert it back to the starting form (another reason why I dislike pH gradients!

. Since the starting form is usually more weakly bound, you should run a higher concentration until conversion is complete. How high the concentration (and how many column volumes) depends on the difference in binding. Check someplace like the Bio-Rad web site for information on converting ion exchangers from one form to another.