I followed the Peripheral Devices Setup Manual:
http://www3.appliedbiosystems.com/cms/g ... 039329.pdf
Check out page 63 of this manual ("Other Autosamplers"), as well as pages 93-96 for contact closure diagrams.
As long as you put it in LC Sync mode and set appropriately Active High or Active low, and wire the cable correctly, Analyst will automatically use the AUX I/O connection for contact closure input and output. You never actually "add" a new device. Analyst will basically be controlling the LC stack blindly.
With our autosampler and LC pump we then have to:
- Start hardware profile
- Make sure the method is set to LC Sync
- Submit samples to the sample queue
- Open the sample queue, make sure the instrument is reserved for acquisition and not tuning
- Select "equilibrate" in order to warm up the instrument
- Configure and run the LC pump, configure the autosampler and set it to Remote mode. Make sure the methods on both instruments are shorter than the Analyst method.
- When everything is equilibrated, and the LC pump is in Ready mode, click Start in the sample queue.
- At this point Analyst sends out a contact closure "ready" signal to the autosampler, which carries out an injection and then responds with a "start out" signal.
- The signal starts Analyst's acquisition clock and the LC pump's program clock at the same time. By the time Analyst ends its program, the pump and autosampler should be finished theirs already so that they can receive the ready/start signals.
Also whenever you activate or deactivate the hardware profile, or whenever the MS changes to standby mode, it will send an "error out" signal to shut off the pump.