Have you purged ALL four channels of your quat pump (even though you are only using two or one) ? That's important, purge each for 5 minutes at 5 ml/min.
Are you degassing, like with Agilent Vacuum degasser? Important. Remember, a vacuum degasser has a hold-up volume of the previous solvent, another reason to fully purge.
Do you have a small leak somewhere?
If that doesn't take care of it, I'd use the premixed mobile phase (I'm assuming nothing precipitated out, and that you filtered it), put ALL four leads into that, purge ALL the channels, and try. That way the multi-channel mixing valve is essentially out of action, as it wouldn't matter how it mixes. Or you could just use one channel and use the adapter fitting to bypass the multi-channel valve and go directly into the active inlet valve.
If that's still fluctuates, I'd go back to IPA and run the Agilent pump flow test protocol to see if my pump was OK.