What conditions are you using for the HILIC separation?
What is the column? The mobile phase?
The column is an ES Industries "Epic" HILIC column, 4.6x250, 5µm, 100A (I think). I can't figure out what the stationary phase actually is, but I -believe- it's nothing fancy. Just bare silica, or diol, or something.
The mobile phase that fully retains Acetic Acid and barely retains TFA is 2% MeOH in 0.1M sodium phosphate (pH of around 2-2.5). Switching to 0.1% phosphoric acid resulted in the TFA not being retained, but didn't really effect the acetic acid peak at all. Switching to a 0.1M ammonium phosphate with a pH of around 6 resulted in very good retention with the TFA and no retention of the Acetic Acid. I tried doing phosphoric acid in more of a hilic mode (5% H2O, 0.1% H3PO4), but that didn't work at all.
We used to use a 1mN sulfuric acid mobile phase on a Hamilton X300 IE column for quantification of acetate counter-ion, but we switched to this methodology in order to analyze TFA as well. The method using a C18 column actually seems to be a whole lot more robust (better peak shapes, better resolution, etc.) than trying to TFA and Acetate on the X300. Granted, though, we didn't really explore any method development and just used the method supplied by Hamilton for analysis of acetic acid. My goal was to try and increase the sensitivity on the C18 method (which, actually, is already more sensitive than the ion exclusion method, probably just due to the fact that the flowrate is reduced by 1/4) without purchasing any new column.
In doing some routine work this past week, I discovered that the peak shape for the TFA was actually very good (TP > 10,000) at the lower levels of my concentration curve. My goal was to create a method that would allow analysis of both acetate and TFA salts, and would be capable of detecting residual TFA in an acetate salt at the 100ppm level, but I don't think I'm going to be able to do that. Instead, I should be able to develop a separate method for acetate salts by engineering a special standard curve.
danko: Purchasing a new column (especially one as expensive as a mixed mode column) is, unfortunately, a tough sell right now. We actually have two anion exclusion columns from Hamilton on hand right now, an X100 and an X300. Hamilton doesn't, unfortunately, have any applications on their website that include both acetate and TFA, and it really seems like they have really poor capacity and peak shape (the peaks are symmetrical, but extraordinarily wide).