If I was the original poster, I'd be a little peeved at the implicit assumption that I don't know much chromatography.
I assume, given that he has an expensive UPLC-type toy, and he's developing methods for regulatory approval, he would move to a different column, and possibly even a different methodology.
My answer ( the original poster may differ ) to some of the above comments. Veterinary drugs are usually controlled by the same regulatory body that controls pharmaceuticals. Consequently, developing a method based on an established compendial procedures will usually attract less scrutiny. It may be that the purchased bulk API is tested using the USP method, rather than the EP method.
In the bad old days, when veterinary grade APIs were only about 1/3 price of pharma grade, one employer used to buy both grades, and back blend to 98.5% ( spec was 98 - 101.5 % ) assay or upper limit of an impurity, then full retest of the blend to compendum before making tablets.
The regulators these days wouldn't allow that. Besides, veterinary grades can be as expensive as pharma grades.
With regard to the continued use of an ion-pair agent ( thanks CPG ), the method works, and presumably was originally developed and approved by analysts who found it met all objectives. Modified, it may even meet the OP's needs as well, despite the scorn of some...
Yes, knowledge and columns have improved, possibly offering superior options, but that does not mean the original chromatographers were a bunch of dumb bunnies randomly trying to achieve separations.
Please keep having fun,
Bruce Hamilton