Okay, either I'm misinterpreting something or there is a typo in your numbers.
In the original post, you said that resolution decreased from 2.9 to 2.3 (this is a bit more than a 20% decrease). This doesn't fit with the retention time numbers in your last post, where the retention time difference decreased from 1.4 minutes (6.0-4.6) to 0.3 minutes (4.6-4.3).
That question aside, you have the following variables to look at:
- column lot
- column storage time
- instrument configuration
- instrument equilibration time.
- mobile phase preparation.
If this were my problem, I'd "divide and conquer":
1. start with a new column of an identifiable lot number on one instrument, and track the results over several batches of mobile phase to convince yourself that the results are consistent with respect to the mobile phase.
2. come up with a way of measuring mobile phase temperature in real time. The best would be a tee with a thermocouple. I'd try to get two sets of measurements: just upstream of the column and just downstream of the column. Check what the real temperature is (not just your set point), and check that your incoming mobile phase has been heated to the column temperature before it gets to the column.
3. Once you're getting consistent results, move the column and temperature sensor to the second instrument. Repeat with the other instruments.
If you get instrument-to-instrument variations (which is what I suspect is the most likely cause of the problem), then find and fix the cause. You may have to set each instrument to a different temperature in order to get the same on-column temperature, and you may have to add preheater tubing to warm up the mobile phase. Check out the posts in this thread for some additional input and comments that may be relevant:
http://www.sepsci.com/chromforum/viewtopic.php?t=2568
4. Once you can get consistent results from instrument to instrument, get a new column from a different batch and check that. Hopefully, the results will match. If not, you will either have to "cherry pick" column batches or else re-work the method to minimize the variation (either a different brand of column or change conditions to be more robust). Assuming you can establish that the lot-to-lot variation is acceptable, then I wouldn't worry about the issue of using a year-old column, just buy a new column next year. The price of a new column is small compared to the cost of running the lifetime test!