Hi Gung
Depending on injector and column tempratures and split ratio you might have deposited some muck in your column. If you remove the column form the gc and examine it against a bright light you might be able to see deposits inside it. If these are close to the inlet end just cut off the affected piece of column - this will not materially affect the resolution. If the deposits are further in you might have to try rinsing the column with methanol or even water, bust check first with the manufacturers that the column is likely to survive this.
A better way to check if there are any analytes left in the aqueous phase is to do another extraction with acetonitrile and then run that - the ratio between the first and second peak areas gives the % of analyte that is extracted each time.
Peter
Thanks a lot Peter. Will try cleaning the column and also the double extraction.
Great suggestions.
Regards,
Gung