Give the two injections the same label in your sample set such as U1 or U2 etc.
Then create a peak, real, calculated custom field with a search order of Result Set Only, Peak and Sample Type of All, the All or Nothing option not ticked and the missing peak not ticked. The formula is:
(SAME.SAME.SAME.MAX(Area)-SAME.SAME.SAME.MIN(Area)/SAME.SAME.SAME.AVE(Area))*100
Make sure the function Summarize Custom Fields is in as the last line of the sample set. Then process a sample set to generate a result set and your answer will be in the result set.
If its 2 injections of the same sample then the formula is edited slightly:
(SAME.%.SAME.MAX(Area)-SAME.%.SAME.MIN(Area)/SAME.SAME.SAME.AVE(Area))*100