From a simple Pubmed search I found several apparently-relevant articles.. The choice of Internal Standard and handling conditions are important,and others have achieved acceptable results.
Perhaps if you carefully reviewed the following articles you might obtain some helpful information.  
Determination of minocycline in human plasma by high-performance liquid chromatography coupled to tandem mass spectrometry: application to bioequivalence study.
Araujo MV, Ifa DR, Ribeiro W, Moraes ME, Moraes MO, de Nucci G. 
J Chromatogr B Biomed Sci Appl. 2001 May 5;755(1-2):1-7.
High-performance liquid chromatographic assay for minocycline in human plasma and parotid saliva.
Orti V, Audran M, Gibert P, Bougard G, Bressolle F. 
J Chromatogr B Biomed Sci Appl. 2000 Feb 11;738(2):357-65.  
" In the two matrices studied at 20 and 4 degrees C, rapid degradation of the drug occurred. Frozen at -30 degrees C, this drug was stable for at least 2 months, the percent recovery averaged 90%. "
Liquid chromatographic determination of minocycline in brain-to-plasma distribution studies in the rat.
Colovic M, Caccia S. 
J Chromatogr B Analyt Technol Biomed Life Sci. 2003 Jul 5;791(1-2):337-43.
Bruce Hamilton