I haven't got the latest EP handy, but I hope that the peak to valley ratio is not the "latest and greatest ", as it's only supposed to be used as an additional system suitability test for related substances only when the chromatography is poor.
Specifically, the test is applied when baseline separation between two peaks is not reached. The details, along with an example, are in Section 2.2.46 "Chromatographic Separation Techniques ", subsection "Separation Data ". Improve the resolution to >1.5 and the p/v ratio becomes irrelevant.
The example shows how you divide the height of the minor peak (measured from the extrapolated baseline of the major peak ), by the height of the valley ( between the two peaks ) measured down to the same extrapolated major peak baseline.
I've no idea how to calculate it with your software, and it's proably best to ask the software vendor.
Please keep having fun,
Bruce Hamilton