Matt,
Occasionally, this phenomenon is reported with this column. Most likely the cause of your problem is related to iron. The first order of business is to check the label specification on your sodium hydroxide source. Generally, the preferred source of sodium hydroxide is 50% sodium hydroxide from Fisher. But whatever the source, the iron content of your sodium hydroxide must be equal to or < 3 parts per million (based on a 50% solution). Whatever you do, don't use sodium hydroxide pellets to make your eluent since the outer surface of pellets it is invariably coated with carbonate which will contaminate your eluent.
Assuming that the problem is indeed from your sodium hydroxide, you will need to decontaminate your column and suppressor to remove the iron oxide precipitate. The most effective way to do so is to pump a solution of 0.2 molar oxalic acid through the column and separately pass the same solution through the suppressor (passing it through both the eluent and regenerant chambers). Dissolution of iron oxide is rather slow, so it's best to pass the solution through the column or suppressor overnight to give it enough time to completely dissolve the iron oxide. If possible, it's best to use something other than your analytical system to pump this solution through the column or suppressor. You can use a syringe to accomplish treatment of the latter since the cleaning solution doesn't need to be flowing continuously to remove all the iron. It should be sufficient to rinse it with a few milliters of oxalic acid and then let it sit overnight and rinse it with a few more milliliters of oxalic acid in the morning. The column, on the other hand, will need a pump given the column's back pressure. If you don't have a separate pump available, then you need to make sure that you have completely rinsed all of the oxalic acid out of your system before switching back to sodium hydroxide eluent. The easiest way to check this is to directly connect a line from the injection valve to the conductivity cell and rinse the system with deionized water until the conductivity drops below 2microS before switching back to eluent and reconnecting the column and suppressor.
A couple of final questions: have you injected any real samples yet? If so, do any of your samples contain iron which has been added as a water treatment chemical? This might also be a cause of this problem. There are solutions to this problem as well but from your original description, it doesn't sound like you've injected that many samples so most likely this isn't the cause of your problem.